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BioLiP Library
Download all results in tab-seperated text for 149 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6bz7:QB (3.68) BS01 rna ? GO:0003735 ... P80371 30476222
    2 6bz7:QC (3.68) BS01 rna ? GO:0003676 ... P80372 30476222
    3 6bz7:QD (3.68) BS01 rna ? GO:0003723 ... P80373 30476222
    4 6bz7:QD (3.68) BS02 SF4 ? GO:0003723 ... P80373 30476222
    5 6bz7:QE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    6 6bz7:QF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    7 6bz7:QG (3.68) BS01 rna ? GO:0000028 ... P17291 30476222
    8 6bz7:QG (3.68) BS02 rna ? GO:0000028 ... P17291 30476222
    9 6bz7:QH (3.68) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    10 6bz7:QI (3.68) BS01 rna ? GO:0000049 ... P80374 30476222
    11 6bz7:QI (3.68) BS02 rna ? GO:0000049 ... P80374 30476222
    12 6bz7:QJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    13 6bz7:QJ (3.68) BS02 rna ? GO:0000049 ... Q5SHN7 30476222
    14 6bz7:QK (3.68) BS01 rna ? GO:0003735 ... P80376 30476222
    15 6bz7:QL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    16 6bz7:QM (3.68) BS01 rna ? GO:0000049 ... P80377 30476222
    17 6bz7:QM (3.68) BS02 rna ? GO:0000049 ... P80377 30476222
    18 6bz7:QN (3.68) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    19 6bz7:QN (3.68) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    20 6bz7:QO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    21 6bz7:QO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    22 6bz7:QP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    23 6bz7:QQ (3.68) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    24 6bz7:QR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    25 6bz7:QS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    26 6bz7:QT (3.68) BS01 rna ? GO:0003723 ... P80380 30476222
    27 6bz7:R0 (3.68) BS01 rna ? GO:0003735 ... P60493 30476222
    28 6bz7:R0 (3.68) BS02 rna ? GO:0003735 ... P60493 30476222
    29 6bz7:R1 (3.68) BS01 rna ? GO:0003735 ... P60494 30476222
    30 6bz7:R2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    31 6bz7:R3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    32 6bz7:R4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    33 6bz7:R5 (3.68) BS01 rna ? GO:0003735 ... P80339 30476222
    34 6bz7:R5 (3.68) BS02 ZN ? GO:0003735 ... P80339 30476222
    35 6bz7:R6 (3.68) BS01 rna ? GO:0000049 ... P35871 30476222
    36 6bz7:R6 (3.68) BS02 ZN ? GO:0000049 ... P35871 30476222
    37 6bz7:R7 (3.68) BS01 rna ? GO:0003735 ... P80340 30476222
    38 6bz7:R8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    39 6bz7:R9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    40 6bz7:R9 (3.68) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    41 6bz7:RD (3.68) BS01 rna ? GO:0002181 ... P60405 30476222
    42 6bz7:RE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    43 6bz7:RE (3.68) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    44 6bz7:RF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    45 6bz7:RF (3.68) BS02 MG ? GO:0003735 ... Q5SHN9 30476222
    46 6bz7:RG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    47 6bz7:RG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    48 6bz7:RG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    49 6bz7:RH (3.68) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    50 6bz7:RI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    51 6bz7:RN (3.68) BS01 rna ? GO:0003729 ... P60488 30476222
    52 6bz7:RO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    53 6bz7:RO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    54 6bz7:RP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    55 6bz7:RQ (3.68) BS01 rna ? GO:0000049 ... P60489 30476222
    56 6bz7:RQ (3.68) BS02 rna ? GO:0000049 ... P60489 30476222
    57 6bz7:RQ (3.68) BS03 MG ? GO:0000049 ... P60489 30476222
    58 6bz7:RR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    59 6bz7:RS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    60 6bz7:RS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    61 6bz7:RT (3.68) BS01 rna ? GO:0003735 ... P60490 30476222
    62 6bz7:RT (3.68) BS02 rna ? GO:0003735 ... P60490 30476222
    63 6bz7:RU (3.68) BS01 rna ? GO:0000027 ... P60491 30476222
    64 6bz7:RU (3.68) BS02 MG ? GO:0000027 ... P60491 30476222
    65 6bz7:RV (3.68) BS01 rna ? GO:0003723 ... P60492 30476222
    66 6bz7:RW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    67 6bz7:RX (3.68) BS01 rna ? GO:0000027 ... Q5SHP0 30476222
    68 6bz7:RY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    69 6bz7:RY (3.68) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    70 6bz7:RZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    71 6bz7:RZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    72 6bz7:XB (3.68) BS01 rna ? GO:0003735 ... P80371 30476222
    73 6bz7:XC (3.68) BS01 rna ? GO:0003676 ... P80372 30476222
    74 6bz7:XD (3.68) BS01 rna ? GO:0003723 ... P80373 30476222
    75 6bz7:XD (3.68) BS02 SF4 ? GO:0003723 ... P80373 30476222
    76 6bz7:XE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    77 6bz7:XE (3.68) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    78 6bz7:XF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    79 6bz7:XG (3.68) BS01 rna ? GO:0000028 ... P17291 30476222
    80 6bz7:XG (3.68) BS02 rna ? GO:0000028 ... P17291 30476222
    81 6bz7:XH (3.68) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    82 6bz7:XI (3.68) BS01 rna ? GO:0000049 ... P80374 30476222
    83 6bz7:XJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    84 6bz7:XK (3.68) BS01 rna ? GO:0003735 ... P80376 30476222
    85 6bz7:XK (3.68) BS02 MG ? GO:0003735 ... P80376 30476222
    86 6bz7:XL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    87 6bz7:XM (3.68) BS01 rna ? GO:0000049 ... P80377 30476222
    88 6bz7:XM (3.68) BS02 rna ? GO:0000049 ... P80377 30476222
    89 6bz7:XM (3.68) BS03 MG ? GO:0000049 ... P80377 30476222
    90 6bz7:XM (3.68) BS04 MG ? GO:0000049 ... P80377 30476222
    91 6bz7:XM (3.68) BS05 MG ? GO:0000049 ... P80377 30476222
    92 6bz7:XN (3.68) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    93 6bz7:XN (3.68) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    94 6bz7:XO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    95 6bz7:XO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    96 6bz7:XP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    97 6bz7:XQ (3.68) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    98 6bz7:XQ (3.68) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    99 6bz7:XR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    100 6bz7:XS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    101 6bz7:XT (3.68) BS01 rna ? GO:0003723 ... P80380 30476222
    102 6bz7:Y0 (3.68) BS01 rna ? GO:0003735 ... P60493 30476222
    103 6bz7:Y0 (3.68) BS02 rna ? GO:0003735 ... P60493 30476222
    104 6bz7:Y1 (3.68) BS01 rna ? GO:0003735 ... P60494 30476222
    105 6bz7:Y2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    106 6bz7:Y3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    107 6bz7:Y3 (3.68) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    108 6bz7:Y4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    109 6bz7:Y5 (3.68) BS01 rna ? GO:0003735 ... P80339 30476222
    110 6bz7:Y5 (3.68) BS02 ZN ? GO:0003735 ... P80339 30476222
    111 6bz7:Y6 (3.68) BS01 rna ? GO:0000049 ... P35871 30476222
    112 6bz7:Y6 (3.68) BS02 ZN ? GO:0000049 ... P35871 30476222
    113 6bz7:Y7 (3.68) BS01 rna ? GO:0003735 ... P80340 30476222
    114 6bz7:Y8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    115 6bz7:Y9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    116 6bz7:Y9 (3.68) BS02 MG ? GO:0003735 ... Q5SHR2 30476222
    117 6bz7:YD (3.68) BS01 rna ? GO:0002181 ... P60405 30476222
    118 6bz7:YD (3.68) BS02 rna ? GO:0002181 ... P60405 30476222
    119 6bz7:YD (3.68) BS03 MG ? GO:0002181 ... P60405 30476222
    120 6bz7:YE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    121 6bz7:YE (3.68) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    122 6bz7:YF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    123 6bz7:YG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    124 6bz7:YG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    125 6bz7:YG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    126 6bz7:YH (3.68) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    127 6bz7:YI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    128 6bz7:YI (3.68) BS02 rna ? GO:0003735 ... Q5SLQ1 30476222
    129 6bz7:YN (3.68) BS01 rna ? GO:0003729 ... P60488 30476222
    130 6bz7:YO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    131 6bz7:YO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    132 6bz7:YP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    133 6bz7:YP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    134 6bz7:YQ (3.68) BS01 rna ? GO:0000049 ... P60489 30476222
    135 6bz7:YQ (3.68) BS02 rna ? GO:0000049 ... P60489 30476222
    136 6bz7:YR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    137 6bz7:YS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    138 6bz7:YS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    139 6bz7:YT (3.68) BS01 rna ? GO:0003735 ... P60490 30476222
    140 6bz7:YT (3.68) BS02 rna ? GO:0003735 ... P60490 30476222
    141 6bz7:YU (3.68) BS01 rna ? GO:0000027 ... P60491 30476222
    142 6bz7:YV (3.68) BS01 rna ? GO:0003723 ... P60492 30476222
    143 6bz7:YW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    144 6bz7:YX (3.68) BS01 rna ? GO:0000027 ... Q5SHP0 30476222
    145 6bz7:YX (3.68) BS02 MG ? GO:0000027 ... Q5SHP0 30476222
    146 6bz7:YY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    147 6bz7:YY (3.68) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    148 6bz7:YZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    149 6bz7:YZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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