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BioLiP Library
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wzo:11 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    2 4wzo:11 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    3 4wzo:11 (3.3) BS03 MG ? GO:0002181 ... P60405 26037619
    4 4wzo:11 (3.3) BS04 MG ? GO:0002181 ... P60405 26037619
    5 4wzo:12 (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    6 4wzo:15 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    7 4wzo:19 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    8 4wzo:19 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    9 4wzo:1A (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    10 4wzo:1E (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    11 4wzo:1I (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    12 4wzo:21 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    13 4wzo:22 (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    14 4wzo:25 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    15 4wzo:25 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    16 4wzo:29 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    17 4wzo:29 (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    18 4wzo:2A (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    19 4wzo:2A (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    20 4wzo:2E (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    21 4wzo:2I (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    22 4wzo:2I (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    23 4wzo:31 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    24 4wzo:32 (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    25 4wzo:32 (3.3) BS02 ZN ? GO:0003723 ... P80373 26037619
    26 4wzo:35 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    27 4wzo:39 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    28 4wzo:3A (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    29 4wzo:3E (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    30 4wzo:3E (3.3) BS02 MG ? GO:0003723 ... P80373 26037619
    31 4wzo:3E (3.3) BS03 ZN ? GO:0003723 ... P80373 26037619
    32 4wzo:3I (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    33 4wzo:41 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    34 4wzo:41 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    35 4wzo:41 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    36 4wzo:41 (3.3) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    37 4wzo:41 (3.3) BS05 MG ? GO:0000049 ... Q5SHQ0 26037619
    38 4wzo:42 (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    39 4wzo:45 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    40 4wzo:45 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    41 4wzo:49 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    42 4wzo:49 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    43 4wzo:49 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    44 4wzo:4A (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    45 4wzo:4E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    46 4wzo:4E (3.3) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    47 4wzo:4I (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    48 4wzo:4I (3.3) BS02 rna ? GO:0000049 ... P80377 26037619
    49 4wzo:4I (3.3) BS03 rna ? GO:0000049 ... P80377 26037619
    50 4wzo:51 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    51 4wzo:52 (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    52 4wzo:55 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    53 4wzo:58 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    54 4wzo:59 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    55 4wzo:5A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    56 4wzo:5A (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    57 4wzo:5E (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    58 4wzo:5I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    59 4wzo:5I (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    60 4wzo:61 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    61 4wzo:62 (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    62 4wzo:62 (3.3) BS02 rna ? GO:0000028 ... P17291 26037619
    63 4wzo:65 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    64 4wzo:65 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    65 4wzo:68 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    66 4wzo:68 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    67 4wzo:69 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    68 4wzo:69 (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    69 4wzo:6A (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    70 4wzo:6A (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    71 4wzo:6E (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    72 4wzo:6E (3.3) BS02 rna ? GO:0000028 ... P17291 26037619
    73 4wzo:6I (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    74 4wzo:6I (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    75 4wzo:71 (3.3) BS01 rna ? GO:0000049 ... P27150 26037619
    76 4wzo:72 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    77 4wzo:75 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    78 4wzo:75 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    79 4wzo:78 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    80 4wzo:7A (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    81 4wzo:7E (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    82 4wzo:7I (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    83 4wzo:82 (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    84 4wzo:82 (3.3) BS02 rna ? GO:0000049 ... P80374 26037619
    85 4wzo:85 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    86 4wzo:88 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    87 4wzo:88 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    88 4wzo:88 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    89 4wzo:88 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    90 4wzo:8A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    91 4wzo:8E (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    92 4wzo:8I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    93 4wzo:95 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    94 4wzo:98 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    95 4wzo:9A (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    96 4wzo:9I (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    97 4wzo:A5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    98 4wzo:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    99 4wzo:A8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    100 4wzo:AA (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    101 4wzo:AI (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    102 4wzo:B5 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    103 4wzo:B8 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    104 4wzo:B8 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    105 4wzo:BA (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    106 4wzo:BI (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    107 4wzo:C5 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    108 4wzo:C5 (3.3) BS02 MG ? GO:0003723 ... Q5SHP9 26037619
    109 4wzo:C5 (3.3) BS03 ZN ? GO:0003723 ... Q5SHP9 26037619
    110 4wzo:C8 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    111 4wzo:D5 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    112 4wzo:D8 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    113 4wzo:E5 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    114 4wzo:E5 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    115 4wzo:E8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    116 4wzo:F5 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    117 4wzo:F5 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    118 4wzo:F8 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    119 4wzo:G5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    120 4wzo:G8 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    121 4wzo:G8 (3.3) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    122 4wzo:H5 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    123 4wzo:H5 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    124 4wzo:H8 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    125 4wzo:I5 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    126 4wzo:I8 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    127 4wzo:I8 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    128 4wzo:J5 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    129 4wzo:J8 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    130 4wzo:J8 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    131 4wzo:K8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    132 4wzo:L5 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    133 4wzo:L8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    134 4wzo:L8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    135 4wzo:M5 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    136 4wzo:M8 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    137 4wzo:N8 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    138 4wzo:P8 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    139 4wzo:Q8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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