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BioLiP Library
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7opd:A (3.0) BS01 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 34526721
    2 7opd:A (3.0) BS02 rna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 34526721
    3 7opd:A (3.0) BS03 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 34526721
    4 7opd:A (3.0) BS04 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 34526721
    5 7opd:A (3.0) BS05 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 34526721
    6 7opd:A (3.0) BS06 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 34526721
    7 7opd:B (3.0) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 34526721
    8 7opd:B (3.0) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 34526721
    9 7opd:B (3.0) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 34526721
    10 7opd:B (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 34526721
    11 7opd:C (3.0) BS01 ZN ? GO:0000428 ... I3LCH3 34526721
    12 7opd:E (3.0) BS01 dna ? GO:0001054 ... I3LSI7 34526721
    13 7opd:I (3.0) BS01 ZN ? GO:0000428 ... P60899 34526721
    14 7opd:I (3.0) BS02 ZN ? GO:0000428 ... P60899 34526721
    15 7opd:J (3.0) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 34526721
    16 7opd:L (3.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 34526721
    17 7opd:M (3.0) BS01 rna ? GO:0001825 ... Q7KZ85 34526721
    18 7opd:b (3.0) BS01 dna 3.6.4.- GO:0000012 ... Q03468 34526721
    19 7opd:b (3.0) BS02 dna 3.6.4.- GO:0000012 ... Q03468 34526721
    20 7opd:e (3.0) BS01 peptide ? GO:0000082 ... Q13619 34526721
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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