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BioLiP Library
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bvw:0 (4.0) BS01 dna 5.6.2.4 GO:0000112 ... P19447 37148879
    2 8bvw:0 (4.0) BS02 dna 5.6.2.4 GO:0000112 ... P19447 37148879
    3 8bvw:0 (4.0) BS03 peptide 5.6.2.4 GO:0000112 ... P19447 37148879
    4 8bvw:0 (4.0) BS04 peptide 5.6.2.4 GO:0000112 ... P19447 37148879
    5 8bvw:1 (4.0) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 37148879
    6 8bvw:4 (4.0) BS01 ZN ? GO:0000438 ... Q13888 37148879
    7 8bvw:4 (4.0) BS02 ZN ? GO:0000438 ... Q13888 37148879
    8 8bvw:4 (4.0) BS03 ZN ? GO:0000438 ... Q13888 37148879
    9 8bvw:5 (4.0) BS01 ZN ? GO:0000438 ... Q13889 37148879
    10 8bvw:5 (4.0) BS02 ZN ? GO:0000438 ... Q13889 37148879
    11 8bvw:A (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    12 8bvw:A (4.0) BS02 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    13 8bvw:A (4.0) BS03 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 37148879
    14 8bvw:B (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 37148879
    15 8bvw:C (4.0) BS01 ZN ? GO:0000428 ... I3LCH3 37148879
    16 8bvw:I (4.0) BS01 ZN ? GO:0000428 ... P60899 37148879
    17 8bvw:I (4.0) BS02 ZN ? GO:0000428 ... P60899 37148879
    18 8bvw:J (4.0) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 37148879
    19 8bvw:L (4.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 37148879
    20 8bvw:M (4.0) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 37148879
    21 8bvw:M (4.0) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 37148879
    22 8bvw:M (4.0) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 37148879
    23 8bvw:O (4.0) BS01 dna ? GO:0000785 ... P20226 37148879
    24 8bvw:O (4.0) BS02 dna ? GO:0000785 ... P20226 37148879
    25 8bvw:R (4.0) BS01 dna 3.6.4.12 GO:0003677 ... P13984 37148879
    26 8bvw:R (4.0) BS02 dna 3.6.4.12 GO:0003677 ... P13984 37148879
    27 8bvw:U (4.0) BS01 dna ? GO:0000979 ... P52655 37148879
    28 8bvw:W (4.0) BS01 ZN ? GO:0001113 ... P29083 37148879
    29 8bvw:a (4.0) BS01 dna ? GO:0000786 ... P84233 37148879
    30 8bvw:a (4.0) BS02 dna ? GO:0000786 ... P84233 37148879
    31 8bvw:b (4.0) BS01 dna ? GO:0000786 ... P62799 37148879
    32 8bvw:b (4.0) BS02 dna ? GO:0000786 ... P62799 37148879
    33 8bvw:c (4.0) BS01 dna ? GO:0000786 ... P06897 37148879
    34 8bvw:c (4.0) BS02 dna ? GO:0000786 ... P06897 37148879
    35 8bvw:d (4.0) BS01 dna ? GO:0000786 ... P02281 37148879
    36 8bvw:d (4.0) BS02 dna ? GO:0000786 ... P02281 37148879
    37 8bvw:e (4.0) BS01 dna ? GO:0000786 ... P84233 37148879
    38 8bvw:e (4.0) BS02 dna ? GO:0000786 ... P84233 37148879
    39 8bvw:f (4.0) BS01 dna ? GO:0000786 ... P62799 37148879
    40 8bvw:f (4.0) BS02 dna ? GO:0000786 ... P62799 37148879
    41 8bvw:g (4.0) BS01 dna ? GO:0000786 ... P06897 37148879
    42 8bvw:g (4.0) BS02 dna ? GO:0000786 ... P06897 37148879
    43 8bvw:h (4.0) BS01 dna ? GO:0000786 ... P02281 37148879
    44 8bvw:h (4.0) BS02 dna ? GO:0000786 ... P02281 37148879
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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