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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 861841 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 101m:A (2.07) BS01 HEM ? GO:0004601 ... P02185 N/A
    2 102m:A (1.84) BS01 HEM ? GO:0004601 ... P02185 N/A
    3 103m:A (2.07) BS01 HEM ? GO:0004601 ... P02185 N/A
    4 104m:A (1.71) BS01 HEM ? GO:0004601 ... P02185 N/A
    5 105m:A (2.02) BS01 HEM ? GO:0004601 ... P02185 N/A
    6 106m:A (1.99) BS01 HEM ? GO:0004601 ... P02185 N/A
    7 107m:A (2.09) BS01 HEM ? GO:0004601 ... P02185 N/A
    8 108m:A (2.67) BS01 HEM ? GO:0004601 ... P02185 N/A
    9 109m:A (1.83) BS01 HEM ? GO:0004601 ... P02185 N/A
    10 10gs:A (2.2) BS01 VWW 2.5.1.18 GO:0000302 ... P09211 9398518 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    BindingDB: Ki=420nM
    11 10gs:B (2.2) BS01 VWW 2.5.1.18 GO:0000302 ... P09211 9398518 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    BindingDB: Ki=420nM
    12 10mh:A (2.55) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9925782
    13 10mh:A (2.55) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9925782
    14 10mh:A (2.55) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9925782
    15 110m:A (1.77) BS01 HEM ? GO:0004601 ... P02185 N/A
    16 110m:A (1.77) BS02 MNC ? GO:0004601 ... P02185 N/A
    17 111m:A (1.88) BS01 HEM ? GO:0004601 ... P02185 N/A
    18 112m:A (2.34) BS01 HEM ? GO:0004601 ... P02185 N/A
    19 112m:A (2.34) BS02 NPN ? GO:0004601 ... P02185 N/A
    20 117e:A (2.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    21 117e:A (2.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    22 117e:A (2.15) BS03 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    23 117e:A (2.15) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    24 117e:A (2.15) BS05 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    25 117e:B (2.15) BS01 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    26 117e:B (2.15) BS02 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    27 117e:B (2.15) BS03 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    28 117e:B (2.15) BS04 MN 3.6.1.1 GO:0000287 ... P00817 9878371
    29 117e:B (2.15) BS05 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    30 11as:A (2.5) BS01 ASN 6.3.1.1 GO:0000166 ... P00963 9437423
    31 11as:B (2.5) BS01 ASN 6.3.1.1 GO:0000166 ... P00963 9437423
    32 11ba:A (2.06) BS01 UPA 4.6.1.18 GO:0003676 ... P00669 10082366
    33 11ba:B (2.06) BS01 UPA 4.6.1.18 GO:0003676 ... P00669 10082366
    34 11bg:A (1.9) BS01 U2G 4.6.1.18 GO:0003676 ... P00669 10543951
    35 11bg:A (1.9) BS02 U2G 4.6.1.18 GO:0003676 ... P00669 10543951
    36 11bg:A (1.9) BS03 U2G 4.6.1.18 GO:0003676 ... P00669 10543951
    37 11bg:B (1.9) BS01 U2G 4.6.1.18 GO:0003676 ... P00669 10543951
    38 11bg:B (1.9) BS02 U2G 4.6.1.18 GO:0003676 ... P00669 10543951
    39 11gs:A (2.3) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9426214 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    40 11gs:A (2.3) BS02 EAA 2.5.1.18 GO:0000302 ... P09211 9426214 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    BindingDB: IC50=2.6e+4nM
    41 11gs:B (2.3) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9426214 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    42 11gs:B (2.3) BS02 EAA 2.5.1.18 GO:0000302 ... P09211 9426214 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    BindingDB: IC50=2.6e+4nM
    43 121p:A (1.54) BS01 MG 3.6.5.2 GO:0003924 ... P01112 N/A
    44 12as:A (2.2) BS01 ASN 6.3.1.1 GO:0000166 ... P00963 9437423
    45 12as:A (2.2) BS02 AMP 6.3.1.1 GO:0000166 ... P00963 9437423
    46 12as:B (2.2) BS01 ASN 6.3.1.1 GO:0000166 ... P00963 9437423
    47 12as:B (2.2) BS02 AMP 6.3.1.1 GO:0000166 ... P00963 9437423
    48 12ca:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1910042
    49 12gs:A (2.1) BS01 0HH 2.5.1.18 GO:0000302 ... P09211 10452896
    50 12gs:B (2.1) BS01 0HH 2.5.1.18 GO:0000302 ... P09211 10452896
    51 13gs:A (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 10452896
    52 13gs:A (1.9) BS02 SAS 2.5.1.18 GO:0000302 ... P09211 10452896 MOAD: Ki=24uM
    PDBbind: -logKd/Ki=4.62, Ki=24uM
    53 13gs:B (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 10452896
    54 13gs:B (1.9) BS02 SAS 2.5.1.18 GO:0000302 ... P09211 10452896 MOAD: Ki=24uM
    55 13pk:A (2.5) BS01 ADP 2.7.2.3 GO:0000166 ... P07378 9000079
    56 13pk:B (2.5) BS01 ADP 2.7.2.3 GO:0000166 ... P07378 9000079
    57 13pk:C (2.5) BS01 ADP 2.7.2.3 GO:0000166 ... P07378 9000079
    58 13pk:D (2.5) BS01 ADP 2.7.2.3 GO:0000166 ... P07378 9000079
    59 148l:E (1.9) BS01 peptide 3.2.1.17 GO:0003796 ... P00720 8266098
    60 148l:E (1.9) BS02 MUB 3.2.1.17 GO:0003796 ... P00720 8266098
    61 155c:A (2.5) BS01 HEM ? GO:0009055 ... P00096 180013
    62 16pk:A (1.6) BS01 BIS 2.7.2.3 GO:0000166 ... P07378 9642090 PDBbind: -logKd/Ki=5.22, Ki=6uM
    63 17gs:A (1.9) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 N/A
    64 17gs:B (1.9) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 N/A
    65 182l:A (1.8) BS01 BZF 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Ka=8900M^-1
    66 183l:A (1.8) BS01 DEN 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Ka=5170M^-1
    67 184l:A (1.8) BS01 I4B 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Ka=51000M^-1
    PDBbind: -logKd/Ki=4.72, Kd=19uM
    68 185l:A (1.8) BS01 IND 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=289uM
    PDBbind: -logKd/Ki=3.54, Kd=290uM
    69 186l:A (1.8) BS01 N4B 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    70 187l:A (1.8) BS01 PXY 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=422uM
    PDBbind: -logKd/Ki=3.37, Kd=422uM
    BindingDB: Kd=151000nM
    71 188l:A (1.8) BS01 OXE 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=469uM
    PDBbind: -logKd/Ki=3.33, Kd=470uM
    72 18gs:A (1.9) BS01 GDN 2.5.1.18 GO:0000302 ... P09211 10452896
    73 18gs:B (1.9) BS01 GDN 2.5.1.18 GO:0000302 ... P09211 10452896
    74 193l:A (1.33) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    75 194l:A (1.4) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    76 19gs:A (1.9) BS01 BSP 2.5.1.18 GO:0000302 ... P09211 10452896
    77 19gs:A (1.9) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 10452896
    78 19gs:B (1.9) BS01 BSP 2.5.1.18 GO:0000302 ... P09211 10452896
    79 19gs:B (1.9) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 10452896
    80 19hc:A (1.8) BS01 HEM ? GO:0009055 ... Q9RN68 10368280
    81 19hc:A (1.8) BS02 HEM ? GO:0009055 ... Q9RN68 10368280
    82 19hc:A (1.8) BS03 HEM ? GO:0009055 ... Q9RN68 10368280
    83 19hc:A (1.8) BS04 HEM ? GO:0009055 ... Q9RN68 10368280
    84 19hc:A (1.8) BS05 HEM ? GO:0009055 ... Q9RN68 10368280
    85 19hc:A (1.8) BS06 HEM ? GO:0009055 ... Q9RN68 10368280
    86 19hc:A (1.8) BS07 HEM ? GO:0009055 ... Q9RN68 10368280
    87 19hc:A (1.8) BS08 HEM ? GO:0009055 ... Q9RN68 10368280
    88 19hc:A (1.8) BS09 HEM ? GO:0009055 ... Q9RN68 10368280
    89 19hc:A (1.8) BS10 HEM ? GO:0009055 ... Q9RN68 10368280
    90 19hc:B (1.8) BS01 HEM ? GO:0009055 ... Q9RN68 10368280
    91 19hc:B (1.8) BS02 HEM ? GO:0009055 ... Q9RN68 10368280
    92 19hc:B (1.8) BS03 HEM ? GO:0009055 ... Q9RN68 10368280
    93 19hc:B (1.8) BS04 HEM ? GO:0009055 ... Q9RN68 10368280
    94 19hc:B (1.8) BS05 HEM ? GO:0009055 ... Q9RN68 10368280
    95 19hc:B (1.8) BS06 HEM ? GO:0009055 ... Q9RN68 10368280
    96 19hc:B (1.8) BS07 HEM ? GO:0009055 ... Q9RN68 10368280
    97 19hc:B (1.8) BS08 HEM ? GO:0009055 ... Q9RN68 10368280
    98 19hc:B (1.8) BS09 HEM ? GO:0009055 ... Q9RN68 10368280
    99 1a00:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    100 1a00:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    101 1a00:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    102 1a00:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    103 1a01:A (1.8) BS01 HEM ? GO:0004601 ... P69905 9521756
    104 1a01:B (1.8) BS01 HEM ? GO:0004601 ... P68871 9521756
    105 1a01:C (1.8) BS01 HEM ? GO:0004601 ... P69905 9521756
    106 1a01:D (1.8) BS01 HEM ? GO:0004601 ... P68871 9521756
    107 1a02:F (2.7) BS01 dna ? GO:0003677 ... P01100 9510247
    108 1a02:F (2.7) BS02 dna ? GO:0003677 ... P01100 9510247
    109 1a02:J (2.7) BS01 dna ? GO:0003677 ... P05412 9510247
    110 1a02:J (2.7) BS02 dna ? GO:0003677 ... P05412 9510247
    111 1a02:N (2.7) BS01 dna ? GO:0003677 ... Q13469 9510247
    112 1a02:N (2.7) BS02 dna ? GO:0003677 ... Q13469 9510247
    113 1a05:A (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q56268 9739088
    114 1a05:B (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q56268 9739088
    115 1a07:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    116 1a07:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    117 1a08:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    118 1a08:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    119 1a09:A (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    120 1a09:B (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    121 1a0a:A (2.8) BS01 dna ? GO:0046983 ... P07270 9303313
    122 1a0a:A (2.8) BS02 dna ? GO:0046983 ... P07270 9303313
    123 1a0a:B (2.8) BS01 dna ? GO:0046983 ... P07270 9303313
    124 1a0a:B (2.8) BS02 dna ? GO:0046983 ... P07270 9303313
    125 1a0b:A (2.06) BS01 ZN 2.7.13.3 GO:0000160 ... P0AEC3 9054511
    126 1a0c:A (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    127 1a0c:A (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    128 1a0c:B (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    129 1a0c:B (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    130 1a0c:C (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    131 1a0c:C (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    132 1a0c:D (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    133 1a0c:D (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    134 1a0d:A (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    135 1a0d:A (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    136 1a0d:B (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    137 1a0d:B (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    138 1a0d:C (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    139 1a0d:C (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    140 1a0d:D (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    141 1a0d:D (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    142 1a0e:A (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    143 1a0e:A (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    144 1a0e:D (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    145 1a0e:D (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    146 1a0f:A (2.1) BS01 GTS 2.5.1.18 GO:0004364 ... P0A9D2 9680481
    147 1a0f:B (2.1) BS01 GTS 2.5.1.18 GO:0004364 ... P0A9D2 9680481
    148 1a0g:A (2.0) BS01 PMP 2.6.1.21 GO:0003824 ... P19938 9749913
    149 1a0g:B (2.0) BS01 PMP 2.6.1.21 GO:0003824 ... P19938 9749913
    150 1a0h:B (3.2) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 9438869
    151 1a0h:E (3.2) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 9438869
    152 1a0i:A (2.6) BS01 ATP 6.5.1.1 GO:0000166 ... P00969 8653795
    153 1a0j:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P35033 9757092
    154 1a0l:A (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    155 1a0l:B (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    156 1a0l:C (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    157 1a0l:D (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    158 1a0n:B (-1.00) BS01 peptide 2.7.10.2 N/A P06241 8961927
    159 1a0o:A (2.95) BS01 MN ? GO:0000155 ... P0AE67 9437425
    160 1a0o:C (2.95) BS01 MN ? GO:0000155 ... P0AE67 9437425
    161 1a0o:E (2.95) BS01 MN ? GO:0000155 ... P0AE67 9437425
    162 1a0o:G (2.95) BS01 MN ? GO:0000155 ... P0AE67 9437425
    163 1a0q:H (2.3) BS01 ZN ? N/A P01869 9753552
    164 1a0q:H (2.3) BS02 HEP ? N/A P01869 9753552 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    165 1a0q:L (2.3) BS01 ZN ? GO:0005576 ... P01837 9753552
    166 1a0q:L (2.3) BS02 HEP ? GO:0005576 ... P01837 9753552 PDBbind: -logKd/Ki=7.57, Ki=27nM
    167 1a0r:B (2.8) BS01 FAR ? GO:0005515 ... P62871 9739091
    168 1a0s:P (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    169 1a0s:Q (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    170 1a0s:R (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    171 1a0t:P (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    172 1a0t:P (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    173 1a0t:P (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    174 1a0t:P (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    175 1a0t:Q (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    176 1a0t:Q (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    177 1a0t:Q (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    178 1a0t:Q (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    179 1a0t:R (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    180 1a0t:R (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    181 1a0t:R (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    182 1a0t:R (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    183 1a0u:A (2.14) BS01 HEM ? GO:0004601 ... P69905 9521756
    184 1a0u:B (2.14) BS01 HEM ? GO:0004601 ... P68871 9521756
    185 1a0u:C (2.14) BS01 HEM ? GO:0004601 ... P69905 9521756
    186 1a0u:D (2.14) BS01 HEM ? GO:0004601 ... P68871 9521756
    187 1a0z:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    188 1a0z:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    189 1a0z:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    190 1a0z:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    191 1a14:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    192 1a16:A (2.3) BS01 PRO 3.4.11.9 GO:0004177 ... P15034 9520390
    193 1a16:A (2.3) BS02 LEU 3.4.11.9 GO:0004177 ... P15034 9520390
    194 1a16:A (2.3) BS03 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    195 1a16:A (2.3) BS04 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    196 1a1a:A (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    197 1a1a:B (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    198 1a1a:B (2.0) BS02 peptide 2.7.10.2 N/A P12931 9174343
    199 1a1b:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    200 1a1b:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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