Home Research Services Publications People Teaching Jobs Opening Facilities News Forum
Online Services

I-TASSER QUARK LOMETS COACH COFACTOR MetaGO MUSTER SEGMER FG-MD ModRefiner REMO SPRING COTH BSpred SVMSEQ ANGLOR BSP-SLIM SAXSTER ThreaDom ThreaDomEx EvoDesign GPCR-I-TASSER BindProf BindProfX ResQ IonCom STRUM

TM-score TM-align MM-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR NeBcon WDL-RF ATPbind

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13

Subject: Error in code - SES
Date: Fri, 1 Feb 2019 09:59:50 +0000
From: LANGENFELD Florent <florent.langenfeld@lecnam.net>
To: yangzhanglab@umich.edu <yangzhanglab@umich.edu>


Dear EDTsurf maintainers,

I recently used your EDTSurf software to compute SES of proteins. Accordingly with the 
inline documentation, I provided the '-s 4' flag to the soft, which produced a warning  
'omit wrong value after -s' and set the value to the default value of 3 (MS). I observed 
the same behavior for bath the Linux executable and the executable compiled from the 
source code.

I've then made a couple of modifications to the EDTSurf.cpp  and generated an executable 
allowing for the computation of the SES, which seems to work so far. The corrected file 
is attached to this email; please feel free to use the modifications as you wish.

Best regards,

Florent Langenfeld
GBCM - CNAM
2, rue Conté - 75003 Paris

EDTSurf_updated.cpp

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218